PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 50093
Common NameMICPUCDRAFT_50093
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family C2H2
Protein Properties Length: 1073aa    MW: 109936 Da    PI: 7.4471
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
50093genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.7e-05475500123
              EEET..TTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
              +kC+  dCgk F  +s LkrH  + H
    50093 475 FKCGypDCGKIFGAQSGLKRHVTVsH 500
              89*******************98777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.5E-6473496IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.115475505IPR007087Zinc finger, C2H2
SMARTSM003550.012475500IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280477500IPR007087Zinc finger, C2H2
PROSITE profilePS501579.452697724IPR007087Zinc finger, C2H2
SMARTSM003555.9697719IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280699719IPR007087Zinc finger, C2H2
SMARTSM0035517793818IPR015880Zinc finger, C2H2-like
SuperFamilySSF552988.8E-209561070IPR013813Endoribonuclease L-PSP/chorismate mutase-like
Gene3DG3DSA:3.30.1330.404.1E-199571070IPR013813Endoribonuclease L-PSP/chorismate mutase-like
PfamPF010426.9E-149581068IPR006175YjgF/YER057c/UK114 family
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1073 aa     Download sequence    Send to blast
MATSAVDATL KTGNVNAGAD SDATTTAGGA PSPSPARDAA AKDATTAAAP NAPGGNAAEK  60
EPAMTPTQPA WGKLASMVES IVDAPPPGGG RGGKGGRGGR GGKHAKAGRG GSGAMRVVVR  120
HDAPPAAAPA KDVDANENAD AEKAATPTPS ADTSPTTATA TASTLQTKNP VVVVSEAVAA  180
TTAKPVSPVT PEEEPSPAAA VAAAAAPAAE GETDEEILAR CPPPPPGFLI VRSESVGDGP  240
CPFCDSPMKA RGIKKHLAHC KEKPKGYKPA CCPPGFVPIK DSSTEGNKLR EDAAKLANEA  300
ADALREKRME EKKVKAAEKA AATEAAAKAS AKKAGGEEDK DSSTGGAGGI EEGDEQGNGK  360
DGDTPKSNKL IFRAKNGAAA KAAAAAAKPA EVLPGTRPRR ASAKAAAMAE ESSESESESE  420
SGSEPAAAKN LTARPRRKSA TLGVAAAAKA AGPARRASGG KAAVIMHVDL ASKGFKCGYP  480
DCGKIFGAQS GLKRHVTVSH AKDHGDQPFT VVDEATAAAN KGKAGAGGRA RRASAVSNDF  540
AGLSEDEDDE LFEMRATNFT KGGGRGHRSD KDATEISTEE EDDDETIVRG KPTHGGIARF  600
TAGVAQDEDG DEDSEMLGVV AEATYKARAA TREAEAAIAD AKAADMDYEQ GGRAGRKRGA  660
ATPPAGRGRP KQKQKGNKGA ANAKNSADAK DAPKEKEVCE ICGKVFAAVQ GVPSHYKSHV  720
AKAEDAETKQ KAERALYQFQ QRIRDRREKA VVAARSGARA RREAEAEDED EDEDSPGGGA  780
NDAAPLVLNP SARNCSHCGQ GVRFSTQKDL ISHMWSEHKV VAISDPSLVG GGGNRGRASR  840
QASDGWDSGA AAAAAAAAIA AYPNDWIGGG GKNNALAFPG VDAGGTMTIS TGLVQSMISR  900
IDALEKTVAS LGYGGGNGNA NAGAIVASGG NGNAAAMQMH PFDAAAEIKR IPVRGARPGY  960
SPIVTFGRMV WLTGIVALQT VDQDVEGQTR QALEHMTLLL HKAGTDPTHL LRLNVYLADI  1020
RCADRMYKAW NEYFEGLGLS EGQRPVRITH EARLKNEGFR VEVHAEAVLP AK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1433437RPRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003055450.10.0predicted protein
TrEMBLC1MH900.0C1MH90_MICPC; Predicted protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP543744
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]